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I encountered the same problem when I visited the Notation Guide under Advanced Formatting and saw errors in my catalina.out file.
I'm running the Visibility 1.5 plugin with Confluence 2.5.4 on Redhat Enterprise. I was able to hack atlassian-plugin.xml file in the visibilty-plugin-1.5.jar file by editing the "resource" tags, deployed it on my test environment, and it passed successfully. I've enclosed the patch for atlassian-plugin.xml. Could someone explainto me how to apply the patch? I haven't found the magic to change the plugin's jar file so that it doesn't get overwritten every time the appserver restarts.
Paths to the notation guides have been updated.
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<resource type="velocity" name="help" location="org/randombits/confluence/visibility/hideifmacro-help.vm">
<param name="help-section" value="advanced"/>
</resource>
Please fix the location